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Clinical

Periodontitis is associated with a type-1 interferon signature in peripheral blood neutrophils-GSE12484

Purpose

Peripheral blood neutrophils from periodontitis patients exhibit a hyper-reactive and hyper-active phenotype (collectively termed hyper-responsivity) in terms of production of reactive oxygen species (ROS) however the molecular basis for this observation is yet to be determined. Our objectives were to identify genes differentially expressed in hyper-responsive peripheral blood neutrophils from chronic periodontitis patients relative to periodontally healthy controls and use this data to identify potential contributory pathways to the hyper-responsive neutrophil phenotype.

Hypothesis

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Experimental Design

Neutrophils taken from 4 chronic periodontitis patients and age/sex matched healthy controls. RNA extracted and subsequently hybridised in dulpicate on to U133A arrays.

Experimental Variables

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Controls

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Methods

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Additional Information
  • Wright HJ, Matthews JB, Chapple IL, Ling-Mountford N et al. Periodontitis associates with a type 1 IFN signature in peripheral blood neutrophils. J Immunol 2008 Oct 15;181(8):5775-84. PMID: 18832737
  • Microarray
    Affymetrix HG-U133A
    4 Samples Loaded: 4
    Human (Homo sapiens)
    Neutrophils
    Periodontitis
    Sample Set Spreadsheet
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    Samples Preview
    Sample ID !Sample_title cell type RNA from 4 chronic periodontitis patients pooled RNA from neutrophils from 4 chronic periodontitis patients pooled treatment
    GSM313630 Healthy Neutrophils rep1 unstimulated neutrophil Healthy
    GSM313632 Healthy Neutrophils rep2 unstimulated neutrophil Healthy
    GSM313634 Periodontitis Neutrophils rep1 True Periodontitis
    GSM313636 Periodontitis Neutrophils rep2 True Periodontitis
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    sampleset4000032_sampleannotations (1).csv
    Sample Set Spreadsheet
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    Sample ID !Sample Title Cell type RNA from 4 chronic periodontitis patients pooled RNA from neutrophils from 4 chronic periodontitis patients pooled Treatment
    GSM313630
    Healthy Neutrophils rep1
    unstimulated neutrophil
     
     
    Healthy
    GSM313632
    Healthy Neutrophils rep2
    unstimulated neutrophil
     
     
    Healthy
    GSM313634
    Periodontitis Neutrophils rep1
     
    True
     
    Periodontitis
    GSM313636
    Periodontitis Neutrophils rep2
     
     
    True
    Periodontitis

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