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Clinical

Comparison of Fusobacterium Nucleatum stimulated and unstimulated neutrophils-GSE20151

Purpose

Neutrophils are known to be stimulated by different periodontal bacteria to produce reactive oxygen species and cytokines. It is inportant to investigate the gene changes made by bacteria of importance, of which, for periodontal disease, fusobaterium nucleatum is one. we used microarrays to investigate gene experssion changes in peripheral blood neutrophils werwhich e stimulated with or with out Fusobacterium Nucleatum (10953).

Hypothesis

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Experimental Design

Neutrophils from periodonatlly healthy individuals (n=4) were isolated and stimulated for 3hrs with or without fusobaterium nucleatum (10953). RNA was then extracted from these and pooled before hybridization on Affymetrix microarrays

Experimental Variables

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Controls

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Methods

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Additional Information
  • Wright HJ, Chapple IL, Matthews JB, Cooper PR. Fusobacterium nucleatum regulation of neutrophil transcription. J Periodontal Res 2011 Feb;46(1):1-12. PMID: 20663022
  • Microarray
    Affymetrix HG-U133A
    4 Samples Loaded: 4
    Human (Homo sapiens)
    Neutrophils
    Healthy
    Sample Set Spreadsheet
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    Samples Preview
    Sample ID !Sample_title cell type
    GSM313630 Healthy Neutrophils rep1 unstimulated neutrophil
    GSM313632 Healthy Neutrophils rep2 unstimulated neutrophil
    GSM505621 Fusobacterium nucleatum stimulated neutrophils, 1 stimulated neutrophil
    GSM505622 Fusobacterium nucleatum stimulated neutrophils, 2 stimulated neutrophil
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    Sample ID !Sample Title Cell type
    GSM313630
    Healthy Neutrophils rep1
    unstimulated neutrophil
    GSM313632
    Healthy Neutrophils rep2
    unstimulated neutrophil
    GSM505621
    Fusobacterium nucleatum stimulated neutrophils, 1
    stimulated neutrophil
    GSM505622
    Fusobacterium nucleatum stimulated neutrophils, 2
    stimulated neutrophil

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