You are not logged in. | Log in
In Progress
Clinical

Gene expression data from F. tularensis-exposed neutrophils-GSE37416

Purpose

We demonstrated recently that both constitutive and FAS-triggered apoptosis of human neutrophils are profoundly impaired by Francisella tularensis, but how this is achieved is largely unknown. To test the hypothesis that changes in neutrophil gene expression contribute to this phenotype, we used human oligonucleotide microarrays to identify differentially regulated genes in cells infected with F. tularensis strain LVS compared with uninfected controls.In order to examine the effect of F. tularensis on the neutrophil transcriptome, we performed microarray expression analysis on human neutrophils treated with F. tularensis subsp. holarctica live vaccine strain (LVS).

Hypothesis

--

Experimental Design

Polymorphonuclear leukocytes (PMNs) were isolated from the blood of healthy donors. Control and F. tularensis-exposed PMNs were incubated at 37C for 0, 3, 6, 12, 24, and 48 hours.

Experimental Variables

--

Controls

--

Methods

--

Additional Information

Schwartz JT, Bandyopadhyay S, Kobayashi SD, McCracken J et al. Francisella tularensis alters human neutrophil gene expression: insights into the molecular basis of delayed neutrophil apoptosis. J Innate Immun 2013;5(2):124-36. PMID: 22986450

Microarray
Affymetrix HG-U133_Plus_2
48 Samples Loaded: 48
Human (Homo sapiens)
Neutrophils
Healthy
Sample Set Spreadsheet
Please log in in order to upload files.
Samples Preview
Sample ID !Sample_title cell type time Culture conditions
GSM918524 PMN_0hr_ctrl_1 polymorphonuclear leukocytes 0 hr PMN0
GSM918525 PMN_0hr_ctrl_2 polymorphonuclear leukocytes 0 hr PMN0
GSM918526 PMN_0hr_ctrl_3 polymorphonuclear leukocytes 0 hr PMN0
GSM918527 PMN_0hr_ctrl_4 polymorphonuclear leukocytes 0 hr PMN0
GSM918528 PMN_0hr_LVS_1 polymorphonuclear leukocytes 0 hr PMN_LVS0
Please log in in order to upload files.
File
sampleset4000040_sampleannotations.csv
Sample Set Spreadsheet
Raw Signal
Raw Signal
  •   |  View in GXB »
Clinical Datasource
Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Cell type Time Culture conditions
GSM918524
PMN_0hr_ctrl_1
polymorphonuclear leukocytes
0 hr
PMN0
GSM918525
PMN_0hr_ctrl_2
polymorphonuclear leukocytes
0 hr
PMN0
GSM918526
PMN_0hr_ctrl_3
polymorphonuclear leukocytes
0 hr
PMN0
GSM918527
PMN_0hr_ctrl_4
polymorphonuclear leukocytes
0 hr
PMN0
GSM918528
PMN_0hr_LVS_1
polymorphonuclear leukocytes
0 hr
PMN_LVS0
GSM918529
PMN_0hr_LVS_2
polymorphonuclear leukocytes
0 hr
PMN_LVS0
GSM918530
PMN_0hr_LVS_3
polymorphonuclear leukocytes
0 hr
PMN_LVS0
GSM918531
PMN_0hr_LVS_4
polymorphonuclear leukocytes
0 hr
PMN_LVS0
GSM918532
PMN_3hr_ctrl_1
polymorphonuclear leukocytes
3 hr
PMN3
GSM918533
PMN_3hr_ctrl_2
polymorphonuclear leukocytes
3 hr
PMN3
GSM918534
PMN_3hr_ctrl_3
polymorphonuclear leukocytes
3 hr
PMN3
GSM918535
PMN_3hr_ctrl_4
polymorphonuclear leukocytes
3 hr
PMN3
GSM918536
PMN_3hr_LVS_1
polymorphonuclear leukocytes
3 hr
PMN_LVS3
GSM918537
PMN_3hr_LVS_2
polymorphonuclear leukocytes
3 hr
PMN_LVS3
GSM918538
PMN_3hr_LVS_3
polymorphonuclear leukocytes
3 hr
PMN_LVS3
GSM918539
PMN_3hr_LVS_4
polymorphonuclear leukocytes
3 hr
PMN_LVS3
GSM918540
PMN_6hr_ctrl_1
polymorphonuclear leukocytes
6 hr
PMN6
GSM918541
PMN_6hr_ctrl_2
polymorphonuclear leukocytes
6 hr
PMN6
GSM918542
PMN_6hr_ctrl_3
polymorphonuclear leukocytes
6 hr
PMN6
GSM918543
PMN_6hr_ctrl_4
polymorphonuclear leukocytes
6 hr
PMN6
GSM918544
PMN_6hr_LVS_1
polymorphonuclear leukocytes
6 hr
PMN_LVS6
GSM918545
PMN_6hr_LVS_2
polymorphonuclear leukocytes
6 hr
PMN_LVS6
GSM918546
PMN_6hr_LVS_3
polymorphonuclear leukocytes
6 hr
PMN_LVS6
GSM918547
PMN_6hr_LVS_4
polymorphonuclear leukocytes
6 hr
PMN_LVS6
GSM918548
PMN_12hr_ctrl_1
polymorphonuclear leukocytes
12 hr
PMN12
GSM918549
PMN_12hr_ctrl_2
polymorphonuclear leukocytes
12 hr
PMN12
GSM918550
PMN_12hr_ctrl_3
polymorphonuclear leukocytes
12 hr
PMN12
GSM918551
PMN_12hr_ctrl_4
polymorphonuclear leukocytes
12 hr
PMN12
GSM918552
PMN_12hr_LVS_1
polymorphonuclear leukocytes
12 hr
PMN_LVS12
GSM918553
PMN_12hr_LVS_2
polymorphonuclear leukocytes
12 hr
PMN_LVS12
GSM918554
PMN_12hr_LVS_3
polymorphonuclear leukocytes
12 hr
PMN_LVS12
GSM918555
PMN_12hr_LVS_4
polymorphonuclear leukocytes
12 hr
PMN_LVS12
GSM918556
PMN_24hr_ctrl_1
polymorphonuclear leukocytes
24 hr
PMN24
GSM918557
PMN_24hr_ctrl_2
polymorphonuclear leukocytes
24 hr
PMN24
GSM918558
PMN_24hr_ctrl_3
polymorphonuclear leukocytes
24 hr
PMN24
GSM918559
PMN_24hr_ctrl_4
polymorphonuclear leukocytes
24 hr
PMN24
GSM918560
PMN_24hr_LVS_1
polymorphonuclear leukocytes
24 hr
PMN_LVS24
GSM918561
PMN_24hr_LVS_2
polymorphonuclear leukocytes
24 hr
PMN_LVS24
GSM918562
PMN_24hr_LVS_3
polymorphonuclear leukocytes
24 hr
PMN_LVS24
GSM918563
PMN_24hr_LVS_4
polymorphonuclear leukocytes
24 hr
PMN_LVS24
GSM918564
PMN_48hr_ctrl_1
polymorphonuclear leukocytes
48 hr
PMN48
GSM918565
PMN_48hr_ctrl_2
polymorphonuclear leukocytes
48 hr
PMN48
GSM918566
PMN_48hr_ctrl_3
polymorphonuclear leukocytes
48 hr
PMN48
GSM918567
PMN_48hr_ctrl_4
polymorphonuclear leukocytes
48 hr
PMN48
GSM918568
PMN_48hr_LVS_1
polymorphonuclear leukocytes
48 hr
PMN_LVS48
GSM918569
PMN_48hr_LVS_2
polymorphonuclear leukocytes
48 hr
PMN_LVS48
GSM918570
PMN_48hr_LVS_3
polymorphonuclear leukocytes
48 hr
PMN_LVS48
GSM918571
PMN_48hr_LVS_4
polymorphonuclear leukocytes
48 hr
PMN_LVS48

Group Sets View in Gene Expression Browser

Name  
All Samples   View
Culture conditions Default  View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set  
All Samples
Culture conditions
Your bug report has been sent!