Sample Set Annotation Tool: Stimulation by LPS and HMGB1 in peripheral blood neutrophils from patients with sepsis-induced acute lung injury-GSE3037

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Peripheral blood neutrophils were isolated from septic patients and treated in vitro with LPS or HMGB1

Hypothesis

Experimental Design

8 patients, each contributing a control, LPS-treated, and HMGB1-treated neutrophil sample.

Experimental Variables

Controls

Methods

Additional Information

Silva E, Arcaroli J, He Q, Svetkauskaite D et al. HMGB1 and LPS induce distinct patterns of gene expression and activation in neutrophils from patients with sepsis-induced acute lung injury. Intensive Care Med 2007 Oct;33(10):1829-39. PMID: 17581740

Expected Samples:

24 Samples Loaded: 24

Species

Human (Homo sapiens)

Sample Source

Neutrophils

Disease

Sepsis

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample_title	none provided	Culture conditions
GSM66867	Patient 05 control	True	Control
GSM66868	Patient 06 control	True	Control
GSM66869	Patient 07 control	True	Control
GSM66870	Patient 08 control	True	Control
GSM66871	Patient 09 control	True	Control

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File
sampleset4000044_sampleannotations.csv Sample Set Spreadsheet

Samples Viewer / Editor

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Sample ID	!Sample Title	None provided	Culture conditions
GSM66867	Patient 05 control	True	Control
GSM66868	Patient 06 control	True	Control
GSM66869	Patient 07 control	True	Control
GSM66870	Patient 08 control	True	Control
GSM66871	Patient 09 control	True	Control
GSM66872	Patient 12 control	True	Control
GSM66873	Patient 15 control	True	Control
GSM66874	Patient 19 control	True	Control
GSM66875	Patient 05 HMGB1 treated	True	HMGB1
GSM66876	Patient 06 HMGB1 treated	True	HMGB1
GSM66877	Patient 07 HMGB1 treated	True	HMGB1
GSM66878	Patient 08 HMGB1 treated	True	HMGB1
GSM66879	Patient 09 HMGB1 treated	True	HMGB1
GSM66880	Patient 12 HMGB1 treated	True	HMGB1
GSM66881	Patient 15 HMGB1 treated	True	HMGB1
GSM66882	Patient 19 HMGB1 treated	True	HMGB1
GSM66883	Patient 05 LPS treated	True	LPS
GSM66884	Patient 06 LPS treated	True	LPS
GSM66885	Patient 07 LPS treated	True	LPS
GSM66886	Patient 08 LPS treated	True	LPS
GSM66887	Patient 09 LPS treated	True	LPS
GSM66888	Patient 12 LPS treated	True	LPS
GSM66889	Patient 15 LPS treated	True	LPS
GSM66890	Patient 19 LPS treated	True	LPS

Group Sets View in Gene Expression Browser

Name
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Culture conditions	Default	View
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