You are not logged in. | Log in
In Progress
Clinical

Gene expression data from S. aureus-exposed neutrophils-GSE16837

Purpose

Neutrophil lysis after phagocytosis is a process potentially important in the pathogenesis of community-associated methicillin-resistant S. aureus (CA-MRSA) infection. The mechanism for this process is not currently known. Therefore, to better understand CA-MRSA virulence we used human oligonucleotide microarrays to investigate the mechanism underlying enhanced PMN lysis that occurs after phagocytosis of CA-MRSA.In order to examine the effect of S. aureus on the neutrophil transcriptome and to elucidate any possible differences in this effect between hospital- and community-associated S. aureus, we performed microarray expression analysis on human neutrophils treated with hospital- and community-associated S. aureus.

Hypothesis

--

Experimental Design

Polymorphonuclear leukocytes (PMNs) were isolated from the blood of healthy donors. Control and S. aureus-exposed PMNs were incubated at 37C for 1, 2, 3 or 6 hours.

Experimental Variables

--

Controls

--

Methods

--

Additional Information
  • Kobayashi SD, Braughton KR, Palazzolo-Ballance AM, Kennedy AD et al. Rapid neutrophil destruction following phagocytosis of Staphylococcus aureus. J Innate Immun 2010;2(6):560-75. PMID: 20587998
  • Microarray
    Affymetrix HG-U133_Plus_2
    113 Samples Loaded: 113
    Human (Homo sapiens)
    Neutrophils
    Staphylococcus aureus
    Sample Set Spreadsheet
    Please log in in order to upload files.
    Samples Preview
    Sample ID !Sample_title cell type time treatment Cuture conditions
    GSM422118 PMN 0hr ctrl 1 polymorphnuclear leukocytes 0 control CTRL_T0
    GSM422119 PMN 0hr ctrl 2 polymorphnuclear leukocytes 0 control CTRL_T0
    GSM422120 PMN 0hr ctrl 3 polymorphnuclear leukocytes 0 control CTRL_T0
    GSM422121 PMN 0hr ctrl 4 polymorphnuclear leukocytes 0 control CTRL_T0
    GSM422122 PMN 1hr Col 1 polymorphnuclear leukocytes 1 treated with S. aureus strain Col SA_CTRL_T1
    Please log in in order to upload files.
    File
    sampleset4000035_sampleannotations (1).csv
    Sample Set Spreadsheet
    Raw Signal
    Raw Signal
    •   |  View in GXB »
    Clinical Datasource
    Links

    Samples Viewer / Editor

    All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

    Sample ID !Sample Title Cell type Time Treatment Cuture conditions
    GSM422118
    PMN 0hr ctrl 1
    polymorphnuclear leukocytes
    0
    control
    CTRL_T0
    GSM422119
    PMN 0hr ctrl 2
    polymorphnuclear leukocytes
    0
    control
    CTRL_T0
    GSM422120
    PMN 0hr ctrl 3
    polymorphnuclear leukocytes
    0
    control
    CTRL_T0
    GSM422121
    PMN 0hr ctrl 4
    polymorphnuclear leukocytes
    0
    control
    CTRL_T0
    GSM422122
    PMN 1hr Col 1
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain Col
    SA_CTRL_T1
    GSM422123
    PMN 1hr Col 2
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain Col
    SA_CTRL_T1
    GSM422124
    PMN 1hr Col 3
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain Col
    SA_CTRL_T1
    GSM422125
    PMN 1hr Col 4
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain Col
    SA_CTRL_T1
    GSM422126
    PMN 1hr ctrl 1
    polymorphnuclear leukocytes
    1
    control
    CTRL_T1
    GSM422127
    PMN 1hr ctrl 2
    polymorphnuclear leukocytes
    1
    control
    CTRL_T1
    GSM422128
    PMN 1hr ctrl 3
    polymorphnuclear leukocytes
    1
    control
    CTRL_T1
    GSM422129
    PMN 1hr ctrl 4
    polymorphnuclear leukocytes
    1
    control
    CTRL_T1
    GSM422130
    PMN 1hr 10254 1
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 10254
    SA10254_T1
    GSM422131
    PMN 1hr 10254 2
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 10254
    SA10254_T1
    GSM422132
    PMN 1hr 10254 3
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 10254
    SA10254_T1
    GSM422133
    PMN 1hr 10254 4
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 10254
    SA10254_T1
    GSM422134
    PMN 1hr 11490 1
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 11490
    SA11490_T1
    GSM422135
    PMN 1hr 11490 2
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 11490
    SA11490_T1
    GSM422136
    PMN 1hr 11490 3
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 11490
    SA11490_T1
    GSM422137
    PMN 1hr 11490 4
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 11490
    SA11490_T1
    GSM422138
    PMN 1hr 252 1
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 252
    SA252_T1
    GSM422139
    PMN 1hr 252 2
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 252
    SA252_T1
    GSM422140
    PMN 1hr 252 3
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 252
    SA252_T1
    GSM422141
    PMN 1hr 252 4
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 252
    SA252_T1
    GSM422142
    PMN 1hr 9897 1
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 9897
    SA9897_T1
    GSM422143
    PMN 1hr 9897 2
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 9897
    SA9897_T1
    GSM422144
    PMN 1hr 9897 3
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 9897
    SA9897_T1
    GSM422145
    PMN 1hr 9897 4
    polymorphnuclear leukocytes
    1
    treated with S. aureus strain 9897
    SA9897_T1
    GSM422146
    PMN 1hr LB 1
    polymorphnuclear leukocytes
    1
    treated with latex beads
    CTRL_LB_T1
    GSM422147
    PMN 1hr LB 2
    polymorphnuclear leukocytes
    1
    treated with latex beads
    CTRL_LB_T1
    GSM422148
    PMN 1hr LB 3
    polymorphnuclear leukocytes
    1
    treated with latex beads
    CTRL_LB_T1
    GSM422149
    PMN 1hr LB 4
    polymorphnuclear leukocytes
    1
    treated with latex beads
    CTRL_LB_T1
    GSM422150
    PMN 2hr Col 1
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain Col
    SA_CTRL_T2
    GSM422151
    PMN 2hr Col 3
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain Col
    SA_CTRL_T2
    GSM422152
    PMN 2hr Col 4
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain Col
    SA_CTRL_T2
    GSM422153
    PMN 2hr ctrl 1
    polymorphnuclear leukocytes
    2
    control
    CTRL_T2
    GSM422154
    PMN 2hr ctrl 2
    polymorphnuclear leukocytes
    2
    control
    CTRL_T2
    GSM422155
    PMN 2hr ctrl 3
    polymorphnuclear leukocytes
    2
    control
    CTRL_T2
    GSM422156
    PMN 2hr ctrl 4
    polymorphnuclear leukocytes
    2
    control
    CTRL_T2
    GSM422157
    PMN 2hr 10254 1
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 10254
    SA10254_T2
    GSM422158
    PMN 2hr 10254 2
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 10254
    SA10254_T2
    GSM422159
    PMN 2hr 10254 3
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 10254
    SA10254_T2
    GSM422160
    PMN 2hr 10254 4
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 10254
    SA10254_T2
    GSM422161
    PMN 2hr 11490 1
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 11490
    SA11490_T2
    GSM422162
    PMN 2hr 11490 2
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 11490
    SA11490_T2
    GSM422163
    PMN 2hr 11490 3
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 11490
    SA11490_T2
    GSM422164
    PMN 2hr 11490 4
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 11490
    SA11490_T2
    GSM422165
    PMN 2hr 252 1
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 252
    SA252_T2
    GSM422166
    PMN 2hr 252 2
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 252
    SA252_T2
    GSM422167
    PMN 2hr 252 3
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 252
    SA252_T2
    GSM422168
    PMN 2hr 252 4
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 252
    SA252_T2
    GSM422169
    PMN 2hr 9897 1
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 9897
    SA9897_T2
    GSM422170
    PMN 2hr 9897 2
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 9897
    SA9897_T2
    GSM422171
    PMN 2hr 9897 3
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 9897
    SA9897_T2
    GSM422172
    PMN 2hr 9897 4
    polymorphnuclear leukocytes
    2
    treated with S. aureus strain 9897
    SA9897_T2
    GSM422173
    PMN 2hr LB 1
    polymorphnuclear leukocytes
    2
    treated with latex beads
    CTRL_LB_T2
    GSM422174
    PMN 2hr LB 2
    polymorphnuclear leukocytes
    2
    treated with latex beads
    CTRL_LB_T2
    GSM422175
    PMN 2hr LB 3
    polymorphnuclear leukocytes
    2
    treated with latex beads
    CTRL_LB_T2
    GSM422176
    PMN 2hr LB 4
    polymorphnuclear leukocytes
    2
    treated with latex beads
    CTRL_LB_T2
    GSM422177
    PMN 3hr Col 1
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain Col
    SA_CTRL_T3
    GSM422178
    PMN 3hr Col 2
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain Col
    SA_CTRL_T3
    GSM422179
    PMN 3hr Col 3
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain Col
    SA_CTRL_T3
    GSM422180
    PMN 3hr Col 4
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain Col
    SA_CTRL_T3
    GSM422181
    PMN 3hr ctrl 1
    polymorphnuclear leukocytes
    3
    control
    CTRL_T3
    GSM422182
    PMN 3hr ctrl 2
    polymorphnuclear leukocytes
    3
    control
    CTRL_T3
    GSM422183
    PMN 3hr ctrl 3
    polymorphnuclear leukocytes
    3
    control
    CTRL_T3
    GSM422184
    PMN 3hr ctrl 4
    polymorphnuclear leukocytes
    3
    control
    CTRL_T3
    GSM422185
    PMN 3hr 10254 1
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 10254
    SA10254_T3
    GSM422186
    PMN 3hr 10254 2
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 10254
    SA10254_T3
    GSM422187
    PMN 3hr 10254 3
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 10254
    SA10254_T3
    GSM422188
    PMN 3hr 10254 4
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 10254
    SA10254_T3
    GSM422189
    PMN 3hr 11490 1
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 11490
    SA11490_T3
    GSM422190
    PMN 3hr 11490 2
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 11490
    SA11490_T3
    GSM422191
    PMN 3hr 11490 3
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 11490
    SA11490_T3
    GSM422192
    PMN 3hr 11490 4
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 11490
    SA11490_T3
    GSM422193
    PMN 3hr 252 1
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 252
    SA252_T3
    GSM422194
    PMN 3hr 252 3
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 252
    SA252_T3
    GSM422195
    PMN 3hr 252 4
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 252
    SA252_T3
    GSM422196
    PMN 3hr 9897 1
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 9897
    SA9897_T3
    GSM422197
    PMN 3hr 9897 2
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 9897
    SA9897_T3
    GSM422198
    PMN 3hr 9897 3
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 9897
    SA9897_T3
    GSM422199
    PMN 3hr 9897 4
    polymorphnuclear leukocytes
    3
    treated with S. aureus strain 9897
    SA9897_T3
    GSM422200
    PMN 3hr LB 1
    polymorphnuclear leukocytes
    3
    treated with latex beads
    CTRL_LB_T3
    GSM422201
    PMN 3hr LB 2
    polymorphnuclear leukocytes
    3
    treated with latex beads
    CTRL_LB_T3
    GSM422202
    PMN 3hr LB 3
    polymorphnuclear leukocytes
    3
    treated with latex beads
    CTRL_LB_T3
    GSM422203
    PMN 3hr LB 4
    polymorphnuclear leukocytes
    3
    treated with latex beads
    CTRL_LB_T3
    GSM422204
    PMN 6hr Col 1
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain Col
    SA_CTRL_T6
    GSM422205
    PMN 6hr Col 2
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain Col
    SA_CTRL_T6
    GSM422206
    PMN 6hr Col 3
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain Col
    SA_CTRL_T6
    GSM422207
    PMN 6hr Col 4
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain Col
    SA_CTRL_T6
    GSM422208
    PMN 6hr ctrl 1
    polymorphnuclear leukocytes
    6
    control
    CTRL_T6
    GSM422209
    PMN 6hr ctrl 2
    polymorphnuclear leukocytes
    6
    control
    CTRL_T6
    GSM422210
    PMN 6hr ctrl 3
    polymorphnuclear leukocytes
    6
    control
    CTRL_T6
    GSM422211
    PMN 6hr ctrl 4
    polymorphnuclear leukocytes
    6
    control
    CTRL_T6
    GSM422212
    PMN 6hr 10254 1
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 10254
    SA10254_T6
    GSM422213
    PMN 6hr 10254 2
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 10254
    SA10254_T6
    GSM422214
    PMN 6hr 10254 3
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 10254
    SA10254_T6
    GSM422215
    PMN 6hr 10254 4
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 10254
    SA10254_T6
    GSM422216
    PMN 6hr 11490 1
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 11490
    SA11490_T6
    GSM422217
    PMN 6hr 11490 2
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 11490
    SA11490_T6
    GSM422218
    PMN 6hr 11490 3
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 11490
    SA11490_T6
    GSM422219
    PMN 6hr 11490 4
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 11490
    SA11490_T6
    GSM422220
    PMN 6hr 252 1
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 252
    SA252_T6
    GSM422221
    PMN 6hr 252 2
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 252
    SA252_T6
    GSM422222
    PMN 6hr 252 3
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 252
    SA252_T6
    GSM422223
    PMN 6hr 252 4
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 252
    SA252_T6
    GSM422224
    PMN 6hr 9897 1
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 9897
    SA9897_T6
    GSM422225
    PMN 6hr 9897 2
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 9897
    SA9897_T6
    GSM422226
    PMN 6hr 9897 3
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 9897
    SA9897_T6
    GSM422227
    PMN 6hr 9897 4
    polymorphnuclear leukocytes
    6
    treated with S. aureus strain 9897
    SA9897_T6
    GSM422228
    PMN 6hr LB 1
    polymorphnuclear leukocytes
    6
    treated with latex beads
    CTRL_LB_T6
    GSM422229
    PMN 6hr LB 2
    polymorphnuclear leukocytes
    6
    treated with latex beads
    CTRL_LB_T6
    GSM422230
    PMN 6hr LB 3
    polymorphnuclear leukocytes
    6
    treated with latex beads
    CTRL_LB_T6

    Group Sets View in Gene Expression Browser

    Name  
    All Samples   View
    Culture conditions Default  View
    In order to make new Group Sets or change settings, please log in.

    Module Analysis

    Group Set  
    All Samples
    Culture conditions
    Your bug report has been sent!