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Clinical

Neutrophil gene expression in response to Mycobacterium abscessus-GSE39889

Purpose

The response of human neutrophils to the emerging pathogen Mycobacterium abscessus has not been described. However, M. abscessus infections are frequently associated with neutrophil-rich abscesses. To better understand the reponse of neutrophils to M. abscessus we performed gene expression analysis using Affymetrix HG-U133A Plus 2.0 microarrays. Human neutrophils from healthy donors were stimulated with isogenic rough and smooth morphotypes of M. abscessus. Staphylococcus aureus was used as a control. Gene expression was compared to neutrophils left unstimulated. Neutrophils from four individual donors were isolated on separate days and stimulated with freshly prepared bacteria. Neutrophils (stimulated and control) were left for 2 hours before total RNA was isolated, and biotinylated cRNA was prepared by standard methods. Analysis indicates that M. abscessus morphotypes induce a limited number of genes, when compared to S. aureus, which are enriched in genes for cytokines and chemokines, including neutrophil-specific chemokines. These data suggest that neutrophils have a limited response to M. abscessus, which may contribute to neutrophil-rich abscess formation.!Series_overall_design = Human neutrophils from healthy donors were exposed to rough Mab (ATCC 19977T), smooth Mab (ATCC 19977T) and S. aureus (CF clinical strain) for two hours; control cells were exposed to saline.

Hypothesis

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Experimental Design

Human neutrophils from healthy donors were exposed to rough Mab (ATCC 19977T), smooth Mab (ATCC 19977T) and S. aureus (CF clinical strain) for two hours; control cells were exposed to saline.

Experimental Variables

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Controls

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Methods

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Additional Information
  • Malcolm KC, Nichols EM, Caceres SM, Kret JE et al. Mycobacterium abscessus induces a limited pattern of neutrophil activation that promotes pathogen survival. PLoS One 2013;8(2):e57402. PMID: 23451220
  • Microarray
    Affymetrix HG-U133_Plus_2
    16 Samples Loaded: 16
    Human (Homo sapiens)
    Neutrophils
    In vitro Infection
    Sample Set Spreadsheet
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    Samples Preview
    Sample ID !Sample_title cell type treatment disease status Culture conditions
    GSM980734 PMN R-Mab, rep1 blood neutrophils 2 hrs healthy R-Mab
    GSM980735 PMN Sm-Mab, rep1 blood neutrophils 2 hrs healthy Sm-Mab
    GSM980736 PMN Sa, rep1 blood neutrophils 2 hrs healthy S.aureus
    GSM980737 PMN NS, rep1 blood neutrophils 2 hrs healthy Control
    GSM980738 PMN R-Mab, rep2 blood neutrophils 2 hrs healthy R-Mab
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    File
    sampleset4000041_sampleannotations.csv
    Sample Set Spreadsheet
    Raw Signal
    Raw Signal
    •   |  View in GXB »
    Clinical Datasource
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    Samples Viewer / Editor

    All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

    Sample ID !Sample Title Cell type Treatment Disease status Culture conditions
    GSM980734
    PMN R-Mab, rep1
    blood neutrophils
    2 hrs
    healthy
    R-Mab
    GSM980735
    PMN Sm-Mab, rep1
    blood neutrophils
    2 hrs
    healthy
    Sm-Mab
    GSM980736
    PMN Sa, rep1
    blood neutrophils
    2 hrs
    healthy
    S.aureus
    GSM980737
    PMN NS, rep1
    blood neutrophils
    2 hrs
    healthy
    Control
    GSM980738
    PMN R-Mab, rep2
    blood neutrophils
    2 hrs
    healthy
    R-Mab
    GSM980739
    PMN Sm-Mab, rep2
    blood neutrophils
    2 hrs
    healthy
    Sm-Mab
    GSM980740
    PMN Sa, rep2
    blood neutrophils
    2 hrs
    healthy
    S.aureus
    GSM980741
    PMN NS, rep2
    blood neutrophils
    2 hrs
    healthy
    Control
    GSM980742
    PMN R-Mab, rep3
    blood neutrophils
    2 hrs
    healthy
    R-Mab
    GSM980743
    PMN Sm-Mab, rep3
    blood neutrophils
    2 hrs
    healthy
    Sm-Mab
    GSM980744
    PMN Sa, rep3
    blood neutrophils
    2 hrs
    healthy
    S.aureus
    GSM980745
    PMN NS, rep3
    blood neutrophils
    2 hrs
    healthy
    Control
    GSM980746
    PMN R-Mab, rep4
    blood neutrophils
    2 hrs
    healthy
    R-Mab
    GSM980747
    PMN Sm-Mab, rep4
    blood neutrophils
    2 hrs
    healthy
    Sm-Mab
    GSM980748
    PMN Sa, rep4
    blood neutrophils
    2 hrs
    healthy
    S.aureus
    GSM980749
    PMN NS, rep4
    blood neutrophils
    2 hrs
    healthy
    Control

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